What is LAMMPS?
LAMMPS stands for Large-scale Atomic/Molecular Massively Parallel Simulator. It is a classical molecular dynamics simulation code that models an ensemble of particles in a liquid, solid, or gaseous state. It has potentials for soft materials (biomolecules, polymers) and solid-state materials (metals, semiconductors) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. It can be run on either single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain.
LAMMPS is designed to be easy to modify or extend with new capabilities, such as new force field, interatmoic potential, atom types, boundary conditions, or diagnostics.
To get start, user can read the LAMMPS examples provided under /share1/lammps/sample. A sample PBS script is available at /share1/lammps/pbs-lammps.cmd.
Using LAMMPS on HPC system
To setup required environment variables for LAMMPS, please use following command:
|HPC2015||CPU only||module load lammps/impi|
|CPU + GPU||module load cuda lammps/impi|
There is a sample PBS script at /share1/lammps/sample/pbs-lammps.cmd where instructions for GPU-enabled or Xeon Phi-enabled LAMMPS may be found.
Official LAMMPS website: http://lammps.sandia.gov/
LAMMPS online documentation: http://lammps.sandia.gov/doc/Manual.html
LAMMPS Tutorials: http://lammps.sandia.gov/tutorials.html